Code Snippets Nextflow

Short texts Nextflow 🧑‍💻 Code snippets Nextflow ✍️ Reading lists Nextflow 👀

My current Pawsey nextflow.config

process { module = ‘singularity’ executor=’slurm’ queue = {task.memory < 110.GB ? 'workq' : 'highmemq'} clusterOptions = {'--cluster ' + ( task.memory > 60.GB ? ‘zeus’ : ‘magnus’) + ‘ -A YOURGROUP -n 1 –threads-per-core 1’} } executor { $slurm { pollInterval = ‘1 min’ queueStatInterval = ‘5 min’ } $local { pollInterval = ‘2 […]